Masato Kumauchi: search on Z-Library

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1

Spectroscopic ruler for measuring active-site distortions based on Raman optical activity of a hydrogen out-of-plane vibration

Haraguchi, Shojiro, Shingae, Takahito, Fujisawa, Tomotsumi, Kasai, Noritaka, Kumauchi, Masato, Hanamoto, Takeshi, Hoff, Wouter D., Unno, Masashi

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 1.13 MB

english, 2018

2

A Conserved Helical Capping Hydrogen Bond in PAS Domains Controls Signaling Kinetics in the Superfamily Prototype Photoactive Yellow Protein

Kumauchi, Masato, Kaledhonkar, Sandip, Philip, Andrew F., Wycoff, James, Hara, Miwa, Li, Yunxing, Xie, Aihua, Hoff, Wouter D.

Journal:

Journal of the American Chemical Society

Year:

2010

Language:

english

File:

PDF, 4.61 MB

english, 2010

3

Analogue Chromophore Study of the Influence of Electronic Perturbation on Color Regulation of Photoactive Yellow Proteint

Hiroshi Yamada, Masato Kumauchi, Norio Hamada, Xiang-Guo Zheng, II Ho Park, Katsuyoshi Masuda, Kazuo Yoshihara, Fumio Tokunaga

Journal:

Photochemistry and Photobiology

Year:

2006

Language:

english

File:

PDF, 478 KB

english, 2006

4

Identification of Six New Photoactive Yellow Proteins—Diversity and Structure–Function Relationships in a Bacterial Blue Light Photoreceptor

Masato Kumauchi, Miwa T. Hara, Page Stalcup, Aihua Xie, Wouter D. Hoff

Journal:

Photochemistry and Photobiology

Year:

2008

Language:

english

File:

PDF, 1.01 MB

english, 2008

5

Structural Changes during the Photocycle of Photoactive Yellow Protein Monitored by Ultraviolet Resonance Raman Spectra of Tyrosine and Tryptophan

Yamauchi, Seigo, Kumauchi, Masato, Hamada, Norio, Tokunaga, Fumio, El-Mashtoly, Samir F., Unno, Masashi

Journal:

Journal of Physical Chemistry B

Year:

2005

Language:

english

File:

PDF, 393 KB

english, 2005

6

Does the Chromophore’s Ring Move after Photoexcitation of Rhodopsin?

Ebrey, Thomas G., Kumauchi, Masato

Journal:

Biophysical Journal

Year:

2005

Language:

english

File:

PDF, 53 KB

english, 2005

7

Raman Optical Activity Probing Structural Deformations of the 4-Hydroxycinnamyl Chromophore in Photoactive Yellow Protein

Shingae, Takahito, Kubota, Kensuke, Kumauchi, Masato, Tokunaga, Fumio, Unno, Masashi

Journal:

The Journal of Physical Chemistry Letters

Year:

2013

Language:

english

File:

PDF, 364 KB

english, 2013

8

Exploring the Active Site Structure of a Photoreceptor Protein by Raman Optical Activity

Unno, Masashi, Kikukawa, Takashi, Kumauchi, Masato, Kamo, Naoki

Journal:

Journal of Physical Chemistry B

Year:

2013

Language:

english

File:

PDF, 323 KB

english, 2013

9

Photoactive Yellow Protein Terahertz Response: Hydration, Heating and Intermediate States

George, Deepu, Knab, Joseph, He, Yunfen, Kumauchi, Masato, Birge, Robert, Hoff, Wouter, Markelz, Andrea

Journal:

IEEE Transactions on Terahertz Science and Technology

Year:

2013

Language:

english

File:

PDF, 1.25 MB

english, 2013

10

Subpicosecond Excited State Proton Transfer Preceding Isomerization during the Photorecovery of Photoactive Yellow Protein

Carroll, Elizabeth C., Kumauchi, Masato, Hoff, Wouter D., Larsen, Delmar S.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 37 KB

english, 2011

11

Subject index volume 129

Carroll, Elizabeth C., Kumauchi, Masato, Hoff, Wouter D., Larsen, Delmar S.

Journal:

FEMS Microbiology Letters

Year:

1995

File:

PDF, 604 KB

1995

12

Photo-isomerization upshifts the pKa of the Photoactive Yellow Protein chromophore to contribute to photocycle propagation

Naseem, Sadia, Laurent, Adèle D., Carroll, Elizabeth C., Vengris, Mikas, Kumauchi, Masato, Hoff, Wouter D., Krylov, Anna I., Larsen, Delmar S.

Journal:

Journal of Photochemistry and Photobiology A: Chemistry

Year:

2013

Language:

english

File:

PDF, 2.06 MB

english, 2013

13

Side-chain specific isotopic labeling of proteins for infrared structural biology: The case of ring-D4-tyrosine isotope labeling of photoactive yellow protein

Rathod, Rachana, Kang, Zhouyang, Hartson, Steven D., Kumauchi, Masato, Xie, Aihua, Hoff, Wouter D.

Journal:

Protein Expression and Purification

Year:

2012

Language:

english

File:

PDF, 684 KB

english, 2012

14

Active Site Structure of Photoactive Yellow Protein with a Locked Chromophore Analogue Revealed by Near-Infrared Raman Optical Activity

Kubota, Kensuke, Shingae, Takahito, Foster, Nicole D., Kumauchi, Masato, Hoff, Wouter D., Unno, Masashi

Journal:

The Journal of Physical Chemistry Letters

Year:

2013

Language:

english

File:

PDF, 1.66 MB

english, 2013

15

Chromophore Dynamics in the PYP Photocycle from Femtosecond Stimulated Raman Spectroscopy

Creelman, Mark, Kumauchi, Masato, Hoff, Wouter D., Mathies, Richard A.

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 2.12 MB

english, 2014

16

Light-Induced Unfolding of Photoactive Yellow Protein Mutant M100L †

Sasaki, Jun, Kumauchi, Masato, Hamada, Norio, Oka, Toshihiko, Tokunaga, Fumio

Journal:

Year:

2002

Language:

english

File:

PDF, 95 KB

english, 2002

17

Evidence for a Protonated and cis Configuration Chromophore in the Photobleached Intermediate of Photoactive Yellow Protein

Unno, Masashi, Kumauchi, Masato, Sasaki, Jun, Tokunaga, Fumio, Yamauchi, Seigo

Journal:

Journal of the American Chemical Society

Year:

2000

Language:

english

File:

PDF, 42 KB

english, 2000

18

Locked Chromophore Analogs Reveal That Photoactive Yellow Protein Regulates Biofilm Formation in the Deep Sea Bacterium Idiomarina loihiensis

Horst, Michael A. van der, Stalcup, T. Page, Kaledhonkar, Sandip, Kumauchi, Masato, Hara, Miwa, Xie, Aihua, Hellingwerf, Klaas J., Hoff, Wouter D.

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 1.63 MB

english, 2009

19

Low-Frequency Vibrations and Their Role in Ultrafast Photoisomerization Reaction Dynamics of Photoactive Yellow Protein

Chosrowjan, Haik, Taniguchi, Seiji, Mataga, Noboru, Unno, Masashi, Yamauchi, Seigo, Hamada, Norio, Kumauchi, Masato, Tokunaga, Fumio

Journal:

Journal of Physical Chemistry B

Year:

2004

Language:

english

File:

PDF, 416 KB

english, 2004

20

Vibrational Assignment of the 4-Hydroxycinnamyl Chromophore in Photoactive Yellow Protein

Unno, Masashi, Kumauchi, Masato, Tokunaga, Fumio, Yamauchi, Seigo

Journal:

Journal of Physical Chemistry B

Year:

2007

Language:

english

File:

PDF, 273 KB

english, 2007

21

Assignment of Resonance Raman Spectrum of Photoactive Yellow Protein in Its Long-Lived Blue-Shifted Intermediate

Unno, Masashi, Kumauchi, Masato, Sasaki, Jun, Tokunaga, Fumio, Yamauchi, Seigo

Journal:

Journal of Physical Chemistry B

Year:

2003

Language:

english

File:

PDF, 218 KB

english, 2003

22

Resonance Raman Spectroscopy Reveals the Origin of an Intermediate Wavelength Form in Photoactive Yellow Protein †

El-Mashtoly, Samir F., Unno, Masashi, Kumauchi, Masato, Hamada, Norio, Fujiwara, Kimiyo, Sasaki, Jun, Imamoto, Yasushi, Kataoka, Mikio, Tokunaga, Fumio, Yamauchi, Seigo

Journal:

Year:

2004

Language:

english

File:

PDF, 182 KB

english, 2004

23

Resonance Raman Spectroscopy and Quantum Chemical Calculations Reveal Structural Changes in the Active Site of Photoactive Yellow Protein †

Unno, Masashi, Kumauchi, Masato, Sasaki, Jun, Tokunaga, Fumio, Yamauchi, Seigo

Journal:

Year:

2002

Language:

english

File:

PDF, 92 KB

english, 2002

24

Subpicosecond Excited-State Proton Transfer Preceding Isomerization During the Photorecovery of Photoactive Yellow Protein

Carroll, Elizabeth C., Song, Sang-Hun, Kumauchi, Masato, van Stokkum, Ivo H. M., Jailaubekov, Askat, Hoff, Wouter D., Larsen, Delmar S.

Journal:

The Journal of Physical Chemistry Letters

Year:

2010

Language:

english

File:

PDF, 2.12 MB

english, 2010

25

Robustness and evolvability in the functional anatomy of a PER-ARNT-SIM (PAS) domain

Andrew F. Philip, Masato Kumauchi, Wouter D. Hoff and Robert H. Austin

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.30 MB

english, 2010

26

Experimental Detection of the Intrinsic Difference in Raman Optical Activity of a Photoreceptor Protein under Preresonance and Resonance Conditions

Haraguchi, Shojiro, Hara, Miwa, Shingae, Takahito, Kumauchi, Masato, Hoff, Wouter D., Unno, Masashi

Journal:

Angewandte Chemie

Year:

2015

Language:

english

File:

PDF, 1.66 MB

english, 2015

27

Experimental Detection of the Intrinsic Difference in Raman Optical Activity of a Photoreceptor Protein under Preresonance and Resonance Conditions

Haraguchi, Shojiro, Hara, Miwa, Shingae, Takahito, Kumauchi, Masato, Hoff, Wouter D., Unno, Masashi

Journal:

Angewandte Chemie International Edition

Year:

2015

Language:

english

File:

PDF, 1.67 MB

english, 2015

28

Bifurcation in the Ultrafast Dynamics of the Photoactive Yellow Proteins from Leptospira biflexa and Halorhodospira halophila

Mix, L. Tyler, Kirpich, Julia, Kumauchi, Masato, Ren, Jie, Vengris, Mikas, Hoff, Wouter D., Larsen, Delmar S.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.26 MB

english, 2016

29

Non-Canonical Photocycle Initiation Dynamics of the Photoactive Yellow Protein Domain of the PYP-Phytochrome-Related (Ppr) Photoreceptor

Mix, L. Tyler, Hara, Miwa, Rathod, Rachana, Kumauchi, Masato, Hoff, Wouter D., Larsen, Delmar S.

Journal:

The Journal of Physical Chemistry Letters

Year:

2016

Language:

english

File:

PDF, 2.79 MB

english, 2016

30

Excitation-Wavelength Dependent Photocycle Initiation Dynamics Resolve Heterogeneity in the Photoactive Yellow Protein from Halorhodospira halophila

Kumauchi, Masato, Mix, L. Tyler, Carroll, Elizabeth C., Morozov, Dmitry, Pan, Jie, Gordon, Wendy R., Philip, Andrew, Fuzell, Jack, van Stokkum, Ivo H.M., Groenhoff, Gerrit, Hoff, Wouter D., Larsen, De

Journal:

Year:

2018

Language:

english

File:

PDF, 1.06 MB

english, 2018

31

1P239 Active Site Structure of Photoactive Yellow Protein with a Locked Chromophore Analog Revealed by Near Infrared Raman Optical Activity(18A. Photobiology: Vision & Photoreception,Poster)

Shingae, Takahito, Kubota, Kensuke, Foster, Nicole D., Kumauchi, Masato, Hoff, Wouter D., Unno, Masashi

Journal:

Seibutsu Butsuri

Year:

2013

Language:

english

File:

PDF, 693 KB

english, 2013

32

The Color Regulation of Photoactive Yellow Protein(PYP)

Hamada, Norio, Yamamoto, Hitoshi, Kumauchi, Masato, Sasaki, Jun, Sumi, Toshiaki, Ueyama, Norikazu, Tokunaga, Fumio

Journal:

Seibutsu Butsuri

Year:

2001

File:

PDF, 279 KB

2001

33

3Q1036 Active Site Structures of Photoactive Yellow Protein studied by Raman Optical Activity(Photobiology : Vision & Photoreception3,The 49th Annual Meeting of the Biophysical Society of Japan)

Shingae, Takahito, Kubota, Kensuke, Kumauchi, Masato, Tokunaga, Fumio, Unno, Masashi

Journal:

Seibutsu Butsuri

Year:

2011

Language:

english

File:

PDF, 221 KB

english, 2011